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Programming Languages

Expertise: R and Rstudio, Bash, AWK
Familiarity: Git/Github, python


Languages

Spanish - Native
English - B2 (TOEFL-IBT)

Disclaimer

Made with the R package pagedown.

The source code is available at EveliaCoss/CV and is powered by nstrayer/cv.

Last updated on 2023-08-29.

Main

Evelia Lorena Coss Navarrete

Research Associate at Laboratorio Internacional de Investigaci<U+00F3>n Sobre el Genoma Humano - UNAM | Gene regulation | Evolution | Bioinformatics | Autoimmune diseases | lncRNAs

Education

PhD, Plant Biotechnology

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, M<U+00E9>xico

2023 - 2018

  • Dr. Selene Fern<U+00E1>ndez Valverde
  • Identification and characterization of conserved long non-coding RNAs in Brassicaceae.
  • Grade: 9.3/10. First person to graduate from the generation.

M. Sc., Plant Biotechnology

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Guanajuato, M<U+00E9>xico

2018 - 2016

  • Dr. Ra<U+00FA>l <U+00C1>lvarez Venegas and Dr. Stefan de Folter
  • Effect of priming activation on bean nodule development and its relationship against Pseudomonas syringae pv. phaseolicola.
  • Grade: 9.4/10. Second person to graduate from the generation.

B.Sc.,Biotechnology Engineering

Universidad Polit<U+00E9>cnica de Sinaloa (UPSIN).

Sinaloa, M<U+00E9>xico

2016 - 2012

  • Grade: 9.6/10.

Research Experience

Professional Practices 3 | Undergraduate Thesis Student

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Quer<U+00E9>taro, M<U+00E9>xico

2015

  • Dr. Ra<U+00FA>l Alvarez Venegas, Dr. Aar<U+00F3>n Barraza Celis and Dr. Alejandra Hern<U+00E1>ndez Barrera
  • Histochemical analysis of the effect of bean (Phaseolus vulgaris l.) trithorax group methyltransferases during nodulation.

Research Stay 1 (Delfin project)

Universidad Polit<U+00E9>cnica de Sinaloa (UPSIN).

Sinaloa, M<U+00E9>xico

2015

  • Dr. Jes<U+00FA>s Aar<U+00F3>n Salazar Leyva
  • Characterization of the proteolytic properties of the crude extract of aguama fruit (Bromelia pinguin L).
  • Protease analysis by zymography.

Professional Practices 2

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Guanajuato, M<U+00E9>xico

2014

  • Dr. Ra<U+00FA>l <U+00C1>lvarez Venegas and Dr. Aar<U+00F3>n Barraza Celis
  • Analysis of histone methyltransferases expression in different tissues of bean (Phaseolus vulgaris) plant.

Social Service

Facultad de Ciencias del Mar (FACIMAR), Universidad Aut<U+00F3>noma de Sinaloa (UAS)

Sinaloa, M<U+00E9>xico

2014

  • Dr. Miguel <U+00C1>ngel Hurtado Oliva and M.C. Idalia Osuna Ruiz
  • Standardization of biochemical methods in aquatic organisms.

Research Stay 1 (Delfin project)

Facultad de Ciencias del Mar (FACIMAR), Universidad Aut<U+00F3>noma de Sinaloa (UAS)

Sinaloa, M<U+00E9>xico

2014

  • M.C. Idalia Osuna Ruiz.
  • Standardization of biochemical methods for microalgae.

Professional Practices 1

Centro de Investigaci<U+00F3>n en Alimentaci<U+00F3>n y Desarrollo (CIAD)

Sinaloa, M<U+00E9>xico

2013

  • M.P.A. Noem<U+00ED> Garc<U+00ED>a Aguilar and M.C. Gabriela Velasco Blanco
  • Cultivation of herbs (Mentha spicata), oregano (Origanum vulgare), radish (Raphanus sativus), green forage and Tilapia (Oreochromis sp) in an aquaponic system.




Teaching Experience

CDSB 2023 - Quality control in scRNA-Seq

N/A

Virtual event

2023

  • Instructor for CDSB2023
  • Comunidad de Desarrolladores de Software en Bioinform<U+00E1>tica (CDSB), Nodo Nacional de Bioinformatica

Introduction to RNA-seq data analysis with R

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Quer<U+00E9>taro, M<U+00E9>xico

2023

  • Main instructor: Dr. Alejandra Medina-Rivera
  • Instructor for RNAseq_classFEB2023
  • Bioinformatics and Statistics 2, Genomic Sciences Program

Data analysis with R

Centro de Ciencias Matem<U+00E1>ticas (CCM), UNAM

Virtual event

2023

  • Instructor for Manipulacion_de_datos
  • R-ladies Morelia

Helper in R Workshop and Git/Github

Centro de Ciencias Matem<U+00E1>ticas (CCM), UNAM

Virtual event

2022

  • Main instructor: Dr. Abraham Avelar Rivas, M.Sc. Diego Garfias Gallegos and M.Sc. Claudia Ziri<U+00F3>n Mart<U+00ED>nez
  • Helper for Software Carpentry
  • Software Carpentry

Rmarkdown Introduction

Centro de Ciencias Matem<U+00E1>ticas (CCM), UNAM

Virtual event

2022

  • Instructor for Rmarkdown
  • R-ladies Morelia

Data analysis and graphs in R

Centro de Ciencias Matem<U+00E1>ticas (CCM), UNAM

Virtual event

2022

  • Instructor for Marvel_vs_DCcomics
  • R-ladies Morelia

Data Science Writing

Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics

N/A

N/A

2022

  • VanBuren R , Rougon-Cardoso A, Am<U+00E9>zquita EJ, Coss-Navarrete EL, Espinosa-Jaime A, Gonzalez-Iturbe OA, Luckie-Duque AC, Mendoza-Galindo E, Pardo J, Rodr<U+00ED>guez-Guerrero G, Rosiles-Loeza PY, V<U+00E1>squez-Cruz M, Fernandez-Valverde SL, Hern<U+00E1>ndez-Hern<U+00E1>ndez T, Palande S, and Chitwood. DH. Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics, (2022). The Plant Cell, Volume 34, Issue 7, July 2022, Page e1, https://doi.org/10.1093/plcell/koac187

Publications

Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

N/A

N/A

2022

  • Corona-Gomez, J.A., Coss-Navarrete, E.L., Garcia-Lopez, I.J. et al. Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana. Sci Rep 12, 14063 (2022). https://doi.org/10.1038/s41598-022-18254-0

Capter 6- Induction of plant resistance to biotic stress by priming with <U+03B2>-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development

N/A

N/A

2020

  • Coss-Navarrete EL, D<U+00ED>az-Valle A, Alvarez-Venegas R. Chapter 6 - Induction of plant resistance to biotic stress by priming with <U+03B2>-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development, Editor(s): Mohammad Anwar Hossain, Fulai Liu, David J. Burritt, Masayuki Fujita, Bingru Huang, Priming-Mediated Stress and Cross-Stress Tolerance in Crop Plants, Academic Press, 2020, Pages 101-114, ISBN 9780128178928, https://doi.org/10.1016/B978-0-12-817892-8.00006-4.

Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.)

N/A

N/A

2018

  • Barraza A, Coss-Navarrete EL, Vizuet-de-Rueda JC, Mart<U+00ED>nez-Aguilar K, Hern<U+00E1>ndez-Ch<U+00E1>vez JL, Ordaz-Ortiz JJ, Winkler R, Tiessen A, Alvarez-Venegas R. Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.) (2018). Plant Science, Volume 274,Pages 45-58, ISSN 0168-9452, https://doi.org/10.1016/j.plantsci.2018.05.006

CARACTERIZACI<U+00D3>N PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOL<U+00CD>TICA DE LAS PROTEASAS DEL FRUTO DE <U+201C>AGUAMA<U+201D> (Bromelia pinguin L.)

N/A

N/A

2017

  • Moreno-Hen<U+00E1>ndez, J. M., Hern<U+00E1>ndez-Mancillas, X. D., Coss Navarrete, E. L., Ba<U+00F1>uelos-P<U+00E9>rez, M. de J., Salazar-Leyva, J. A., Osuna-Ruiz, I., Rodr<U+00ED>guez-Tirado, V. A., & Mazorra-Manzano, M. <U+00C1>ngel. (2017). CARACTERIZACI<U+00D3>N PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOL<U+00CD>TICA DE LAS PROTEASAS DEL FRUTO DE <U+201C>AGUAMA<U+201D> (Bromelia pinguin L.). Biotecnia, 19(2), 19<U+2013>24. https://doi.org/10.18633/biotecnia.v19i2.380

Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From <U+201C>Aguama<U+201D> Bromelia pinguin L. Fruit Grown in Mexico

N/A

N/A

2016

  • Moreno-Hern<U+00E1>ndez, JM, Hern<U+00E1>ndez-Mancillas, XD, Coss-Navarrete, EL, Mazorra-Manzano, MA, Osuna-Ruiz I, Rodriguez-Tirado, VA, Salazar Leyva JA. Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From <U+201C>Aguama<U+201D> Bromelia pinguin L. Fruit Grown in Mexico. Appl Biochem Biotechnol 182, 181<U+2013>196 (2017). https://doi.org/10.1007/s12010-016-2319-x

Talks and Posters

Sociedad Mexicana de Bioqumica (SMB) X

Poster

Yucatan, M<U+00E9>xico

2022

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jos<U+00E9> Antonio Corona-G<U+00F3>mez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fern<U+00E1>ndez-Valverde
  • Conservation analysis of sequence-divergent lincRNAs in Brassicaceae

FASEB 2021: The Mechanisms of Plany Development

Poster

Virtual event

2021

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jos<U+00E9> Antonio Corona-G<U+00F3>mez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fern<U+00E1>ndez-Valverde
  • Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

EMBL Symposium 2021: The Non-Coding Genome

Poster

Virtual event

2021

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jos<U+00E9> Antonio Corona-G<U+00F3>mez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fern<U+00E1>ndez-Valverde
  • Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

2nd Interinstitutional Congress of Young Researchers

Talk

Chihuahua, M<U+00E9>xico

2015

  • Co-authors: Coss Navarrete EL, Hern<U+00E1>ndez-Mancillas, XD, Salazar Leyva, JA.
  • Biochemical characterization of a crude protease extract obtained from the wild plant aguama (Bromelia pinguin) native to southern Sinaloa.
  • Biotechnology and agricultural science

Delfin, Programa Interinstitucional para el fortalecimiento de la investigacion y el posgrado del pacifico

Talk

Nayarit, M<U+00E9>xico

2014

  • Co-authors: Coss Navarrete EL, Osuna-Ruiz I
  • Standardization of biochemical methods in aquatic organisms.

Courses

CDSB 2023: Creando paquetes de R/Bioconductor para analisis transcriptomico de celula unica

Instructor and helper

Virtual event

2023

  • Main instructor: Dr. Joselyn Cristina Ch<U+00E1>vez Fuentes, Dr. Leonardo Collado-Torres, Dr. Alejandra Medina Rivera, Dra. Evelia Lorena Coss Navarrete, Dr. Laura G<U+00F3>mez Romero, Dr. Yalbi Balderas Mart<U+00ED>nez, Dr. Mirna V<U+00E1>zquez Rosas Landa, M.C. Jos<U+00E9> Antonio Ovando Ric<U+00E1>rdez, M.C. Erick Cuevas Fern<U+00E1>ndez and Andr<U+00E9>s Arredondo Cruz
  • CDSB2023, DE in scRNA-SEq and R/Bioconductor packages
  • Comunidad de Desarrolladores de Software en Bioinform<U+00E1>tica (CDSB), Nodo Nacional de Bioinformatica

Analysis of biological and biomedical transcriptomic data using Artificial Intelligence (AI) and Machine Learning methods (ML) methods with R

UNAM

Quer<U+00E9>taro, M<U+00E9>xico

2022

  • Main instructor: Dr. Javier De Las Rivas (CSIC-USAL-IBSAL, Spain), Dr. Maribel Hernandez Rosales (CINVESTAV, M<U+00E9>xico), Dr. Enrique De Las Rosa (CSIC-USAL-IBSAL, Spain), and Dr. Flavio Spetale (CIFASIS- CONICET-UNR, Argentina).
  • ISCB-LA SoIBio BioNetMX Symposium 2022
  • RiaBio 2022

The art and method of writing a Scientific Manuscript

N/A

Virtual event

2022

  • Main instructor: Dr. Susan Marriott
  • BioScience Writers

Network analysis using igraph for R: a primer

N/A

Virtual event

2021

  • Main instructor: Dr. Guillermo de Anda J<U+00E1>uregui
  • 2nd Workshop in advanced Bioinformatics

Co-expression networks

N/A

Virtual event

2021

  • Main instructor: Dr. Katja Nowick
  • 2nd Workshop in advanced Bioinformatics

Network medicine

N/A

Virtual event

2021

  • Main instructor: Dr. Deisy Gypsi
  • 2nd Workshop in advanced Bioinformatics

CABANA workshop: Introduction to R and Bioconductor for genomic analyses

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, M<U+00E9>xico

2019

  • Main instructor: Dr. Cei Abreu Goodger and Dr. Benilton Carvalho
  • CABANA

Theoretical and Practical HiC Workshop: Wet-Lab and Bioinformatics

Centro de Investigaci<U+00F3>n y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, M<U+00E9>xico

2019

  • Main instructor: Dr. Selene Fernandez-Valverde, Dr. Francisco Perez. America Ramirez and Emilio Sotelo
  • The Royal Society

Mantenimiento correctivo de Computadoras

Universidad de Occidente Unidad Mazatlan

Sinaloa, M<U+00E9>xico

2012

  • Main instructor: M.C. Raymundo Maga<U+00F1>a

Science Communication

Conservacion de lincRNAs en Brassicaceaes

Universidad Polit<U+00E9>cnica de Sinaloa (UPSIN).

Virtual event

2022

  • Ciclo de “Bases y Bytes: Platicas de Bioinformatica”

PODCAST animalitos & plantitas <U+2022> EP01 El caf<U+00E9> m<U+00E1>s caro del mundo con Evelia Coss

N/A

Podcast

2021

  • The Biologist Apprentice

Tercer mesa redonda “Trayectorias acad<U+00E9>micas”

N/A

Virtual event

2021

  • El Rinc<U+00F3>n de la Ciencia

Identificaci<U+00F3>n y caracterizaci<U+00F3>n de ARNs largos no codificantes conservados en Brasicaceas

Tecnol<U+00F3>gico Nacional de M<U+00E9>xico, Instituto Tecnol<U+00F3>gico Superior de Pur<U+00ED>sima del Rinc<U+00F3>n

Guanajuato, M<U+00E9>xico

2019

  • Semana Tecnologica